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… thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties encoded within those genomes. Our aim … of microbial communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … facility, provided this is done in a timely fashion. The publications resulting from such efforts should specify the …

… genomics with metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables … exchange, as well as microbial and plant responses to environmental changes. With advanced mass spectrometry … plants and microbes, and understanding microbiome interactions. The  insights derived are crucial for …

… is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … of Life. We then investigate the coding potential to find novel functions that may impact microbiome structure and …

… algae and plants. These compounds are key to organisms' interactions with their environments and with each other, … is often not fully realized under standard laboratory conditions, with only a small portion of the biosynthetic … of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, and signatures of …

… ecosystems.  By studying microbial communities and their interactions, the Program aims to unlock the fundamental … research provides insights into microbial diversity and metabolic potential, with implications for energy production, environmental sustainability, and many other applications. …

… ATAC-seq, and spatial transcriptomics to profile the plant/environmental interface. We are using these methods to understand how plant cells respond to low nutrient conditions (low nitrogen or low phosphorus), and how cell … Plant / Bacteria / Viral Interactions …

… of terrestrial biogeochemical cycling and inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as improving soil health, … in particular to study inter-organismal interactions. Novel approaches are being explored to predict microbial …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and other metadata to enable comprehensive … Publications … research experience "light" and... they're getting a publication at the end. " — Professor Matt Escobar,  CSU San …

… then we were using these probes to look at host pathogen interactions mostly with like enteric bacteria. And I really … to identify what’s being made. In some cases it might be novel, in some cases it might be– might be a known structure … people doing this but we are very interested in looking at metabolic diversity and new metabolic niches to try to find …