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… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … The Metagenome Program focuses on the high-throughput sequencing …

… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic …

…   Our Sequencing Technologies Group is well-integrated across JGI … automation — and further advancing sequence applications, single cell genomics, biodesign, and metabolomics capabilities.    … An assay used for profiling transcription factor binding sites across entire genomes. This technology has …

… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying … of bacteria and archaea in their natural environments using single cell approaches. This includes linking strain-level …

… The purpose of this policy is to establish communication norms around JGI contributions, … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts …

… focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties …

… data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to … possess genomes and particle sizes that rival those of cellular organisms. Giant viruses challenge the traditional … viruses and cellular life, providing unique insights into viral evolution and complexity, and encode for a treasure …

… parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … mechanisms involved in virus:host interaction and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … up-to-speed with some of the latest developments in microbial genomics, metagenomics, and computational biology, …

… other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on … types) (Nature Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes from …

… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and … as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw …

… Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge … technology in order to enhance the quality of single-cell genomes and directly link functional information with … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes …