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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses … microbial metabolism and activity in natural environments. Integrating metatranscriptomes and metagenomes can, for …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using … metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial …
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Publication Policy
… The purpose of this policy is to establish communication norms around JGI contributions, ensure … recognized and credited for their work, while also adhering to the authorship policies of the journal in which the … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …
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Viral Genomics Group
… Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics … While an ever-increasing number of phage and virus genomes have … as metagenomics and metatranscriptomics provide invaluable information on virus diversity and activity in microbial …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to … the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed …
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Publications
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Industry Engagement Program
… Facility, the JGI serves more than 2,500 users that predominately come from the public sector: academic and government … national security and ensure U.S. energy dominance by integrating supercomputers, datasets and AI agents to solve … AI-ready large-scale data repositories for genome information with analysis tools for mining and prediction …
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Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … through the Community Science Program (CSP), Facilities Integrating Collaborations for User Science (FICUS) …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… of Natural Prodcast. A little bit of a bonus episode, since I’m off schedule, but this is an important one that … thing I can point people to when it comes to getting out information about both SMC, and Jackie, so please do hop … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, … species, enhancing our understanding of plant diversity and integrating various data types to explore the molecular …
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New Lineages of Life Group
… Our research is focused on the discovery and characterization of … bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the …
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