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Publication Policy
… The purpose of this policy is to establish communication norms around … recognized and credited for their work, while also adhering to the authorship policies of the journal in which the … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … modules Currently 206 genomes have been selected with 11 published manuscripts published to-date Testimonials: … A primary purpose of this project is to bring educators from a broad range of …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find …
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Publications
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … scientific audience whereas now I’m sitting here with two people who know way more about natural products than I … like a nice summer day in Seattle I think this was like 2013 or 2014. And antiSMASH — I know you’ve interviewed Marnix …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. … And I set that up. And we finally got that to work 10 years later. But in the meantime there, we had people … and expressing cryptic metabolic pathways” On target identification and cancer biology: “Apoptolidin family …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … Moving forward, I’m hoping to get a new one out every two weeks. This time, we’ve got a great interview with Ben … Right, because they’re so reactive. BEN: …going back to the 1950s. But the structure of which was not known until the …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … to my submission, they were saying that natural product identification– biosynthetic gene cluster identification was … better to do it together, to join forces instead of to make two competing tools. If we had known about your tool, Dan, …
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Strain Engineering
… The focus of this group, in recent years, has been to bring generalizable … expression and functional exploration.  The developed strains represent an additional phase of user-accessible project types, in which DNA-based …
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Biodesign
… into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes for bioenergy, … automations for DNA design, assembly and analysis Overview of biodesign products The JGI Biodesign platform enables … DNA constructs:  Individually arrayed constructs, up to ~150 Kb in length  Pooled libraries such as sgRNA, promoter …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to … metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy … Program is focused on understanding the critical roles of metabolites in living systems, particularly as they …
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