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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, … cycling and inter-organismal interactions. These insights are crucial for addressing key environmental … The program provides high-quality, large-scale genomic data to advance microbial research that drives …
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Partnerships: Adopt-A-Genome
… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review process, …
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Plant Program
… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, … to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing …
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Publication Policy
… research project are appropriately recognized and credited for their work, while also adhering to the authorship policies of the journal in which the … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …
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Metagenome Program
… genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … that govern ecosystem processes. This research provides insights into microbial diversity and metabolic potential, with … Metagenome Program combines large-scale, time-series metagenomic data with detailed characterization of model systems …
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Environmental Genomics Group
… the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties …
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New Lineages of Life Group
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify … between viruses and cellular life, providing unique insights into viral evolution and complexity, and encode for …
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Metabolomics Program
… of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … microbes, and understanding microbiome interactions. The  insights derived are crucial for advancing the bioeconomy, …
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DNA Synthesis Program
… Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, … bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical … Program plays a central role in advancing functional genomics, focusing on developing genetic systems that can …
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Natural Prodcast Episode 7: Ben Shen
… for every episode we put out. I actually put a lot of time into preparing those transcripts, so I hope somebody’s going … on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … natural product – they also often surprise us by giving us insights, inspires us to discover the fundamentals and then …
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Viral Genomics Group
… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and …
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Fungal & Algal Program
… vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and … and biogeochemistry. This research helps translate their genomic potential into practical applications, including sustainable biofuels, … harnesses cutting-edge sequencing technologies and advanced genomic analysis to explore the rich diversity of fungi and …
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