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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … below) for the generation of sequence or metabolomic data, DNA synthesized, and any other contributions, such as …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, … been a pioneering effort in functional genomics since 2012, with a focus on addressing critical energy and environmental …
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Institutional User Agreements
… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …  The recent updates were approved by the DOE to address the DNA Synthesis program. When fully executed, the new User …
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please … are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …
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Natural Prodcast Episode 23: Aaron Puri
… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … of their synthases so that we can start to use the DNA sequence to predict or just understand better the … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Natural Prodcast Episode 16: Marcy Balunas
Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  DAN: Good. How are you?  MARCY: Am fine. I live in a … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … local environments, and so they don’t transfer a lot of DNA back and forth, especially across species. And so then …
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Publications
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Plant Program
… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … the  product offerings and are unrestricted for use. … For DNA synthesis projects: data are subject to a  two-year …
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DNA Methylation in Ensifer Species during Free-Living Growth and during Nitrogen-Fixing Symbiosis with Medicago spp.
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DNA Synthesis Science User Advisory Committee
The DNA Synthesis Science User Advisory Committee is chartered …
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Plant-Microbial Interactions Group
… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … multipartite phenomenon in additional plant and bacterial species of bioenergy importance. … We are using cutting-edge … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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