Search

… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from candidate phyla, major branches in the … estimates show that the gap between cultivated and uncultivated Bacteria and Archaea has steadily been widening …

… recognized and credited for their work, while also adhering to the authorship policies of the journal in which the … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts …

… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics … involves both experimental and computational exploration of uncultivated viral diversity, characterization of molecular …

… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, … to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by sequencing large populations …

… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology … Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in the …

… the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new … and directly link functional information with individual cells. Research Team    … uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal …

…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. … An assay used for profiling transcription factor binding sites across entire genomes. This technology has been …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed …

… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and … Plant microbiomes hold the amazing ability to influence plant development, fitness and … viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host …

… is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning …

… is always associated with toxicity, basically, killing cells. ALISON: Right, because they’re so reactive. BEN: … toxic molecules, and that human beings know, today, for small molecules. So they’re in the picomolar range. ALISON: … this collection in total contains approximately 100,000 bacterial strains, and a hundred thousand fungal strains. …