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Publication Policy
JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … analysis, and interpretation of sequence, metabolomics, and functional genomics data types as well as in advanced …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of Energy Joint Genome Institute, builds … while nurturing a fresh cohort of users Reach the next generation of genome scientists and recruit new talent for …
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Metabolomics Program
… metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy … with gene expression, providing deeper insights into functional genomics. A key focus is understanding the … state-of-the-art instrumentation and informatic approaches.By bridging genomics with metabolomics, the Metabolomics …
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Publications
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform … and ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily … synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is …
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Microbial Program
… datasets, particularly for uncultivated microorganisms, by sequencing large populations of bacteria and archaea in … three domains of life. It provides tools for analyzing the functional capability of microbial communities based on … and metatranscriptomes. It provides rich data such as inferred host taxonomy, conjugation potential, antibiotic …
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Denoising inferred functional association networks obtained by gene fusion analysis
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Natural Prodcast Episode 11: Marnix Medema
… and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells us about forthcoming … home. Or actually not my room, it’s the room of my little baby daughter, who inherited this room from her sister. And it … around it, so you would actually be able to navigate these networks very easily. Also in an HTML format, which is also …
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User Support Analysis Group
The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas …
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Natural Prodcast Episode 15: Katherine Duncan
I came back and I worked on an EU project, the Scottish Association for Marine Science. And then I started my own … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to … at all that space in the data of– if you look at molecular networks and how much is characterized and how much is …
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Secondary Metabolites Program
… underexplored reservoir of secondary metabolites produced by bacteria, fungi, algae and plants. These compounds are … conditions, with only a small portion of the biosynthetic gene clusters (BGCs) being expressed. The program works to … platforms, tools and data for deciphering regulatory networks, and refining experimental approaches to explore …
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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute … of certain types of data to support their use by those generating data. The JGI Data Policy applies to research … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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