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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … The Metagenome Program focuses on the high-throughput sequencing of microbial communities to uncover the complex interactions …
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Environmental Genomics Group
… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which … applications. By recovering population genomes from metagenomes, we gain insights into microbial interactions, …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence … to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find …
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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …
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Partnerships: Adopt-A-Genome
… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … analysis, visualization and interpretation using public datasets.  …
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Viral Genomics Group
… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … involves both experimental and computational exploration of uncultivated viral diversity, characterization of molecular mechanisms involved in virus:host interaction …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … over our interview with Dr Elizabeth (or Betsy) Parkinson from Purdue University. She’s in the Department of Chemistry … in is actually seeing whether we could go into the genomes and predict what the natural product might actually …
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Microbial Program
… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those associated with microeukaryotes, enhances … inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as …
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Products
… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw … assembled to less than 5kb in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … and delays on the work. The transfer of a proposal from one commercial institution to a new commercial …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … their genomic potential into practical applications, including sustainable biofuels, biomaterials, natural …
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Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms
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