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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa … The “Great Plate-Count Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed … belong to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this gap. A …
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Publication Policy
… recognized and credited for their work, while also adhering to the authorship policies of the journal in which the … JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust … — and further advancing sequence applications, single cell genomics, DNA synthesis, and metabolomics … An assay used for profiling transcription factor binding sites across entire …
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Viral Genomics Group
… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at … mechanisms involved in virus:host interaction and host cell take-over by viruses, and attempts to evaluate …
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Micro-Scale Applications Group
… the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also … technology in order to enhance the quality of single-cell genomes and directly link functional information with individual cells. Research Team    …
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … in how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better …
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Publications
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … The research efforts of the group have concentrated in demonstrating the power of data science in tackling grand … types) (Nature Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes from …
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JGI-TMF Critical Minerals and Materials Call
… The joint Critical Minerals and Materials call represents a unique … and analysis will be provided for free to the PI by the Department of Energy’s funding of the JGI. There is … provides customized analysis, the JGI also participates in publication of results. Go here for a video and Q&A with …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … people all over the word who have a common interest, united by natural products, DAN: You guys have put together a … is always associated with toxicity, basically, killing cells. ALISON: Right, because they’re so reactive. BEN: …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome Institute, builds upon thousands of …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched a joint Critical Minerals and Materials proposal call . This represents a … to the user. Most users of the Molecular Foundry work side-by-side with our scientists at Berkeley Lab. Access to the …
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