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Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … T ., Klenk H. P., Kyrpides N. C. 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI …

… is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in … We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C …

… management, processing and visualization of “big data,” and artificial Intelligent/machine learning approaches in data … and comparative analysis of thousands of archaeal and bacterial type strains ( GEBA-type strains project ), the … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … sequence to biological inference. … Genome sequences of key bacterial symbionts of entomopathogenic nematodes: …

… of bacteria and archaea in their natural environments using single cell approaches. This includes linking strain-level genetic … laboratory isolation and genome sequencing of underexplored bacterial and archaeal lineages that are important for …

… cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and … genomics-powered tools to study this complexity, including single-cell and spatial transcriptomics barcode-based … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… technology in order to enhance the quality of single-cell genomes and directly link functional information with …

… this collection in total contains approximately 100,000 bacterial strains, and a hundred thousand fungal strains. … DAN: Yeah, I don’t think your lab is gonna tackle that single handedly, right? So, yeah, getting the community … area I see a great potential will be machine learning and artificial intelligence. I would view that will be the next …

… percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) … Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation of a …