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… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa … of interest. One such effort is targeted at environmental cells that are from candidate phyla, major branches in the … of which belong to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this gap. …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI …

… automation — and further advancing sequence applications, single cell genomics, biodesign, and metabolomics capabilities.    … profiling transcription factor binding sites across entire genomes. This technology has been further scaled to a … level of metabolic activity (BONCAT+FACS). Learn more about single cell genomics through our Micro-Scale Applications …

… The Joint Genome Institute and the Molecular Foundry have launched a … technologies that address challenges in the sourcing, recovery, and utilization of critical minerals and … free of charge, including data such as fully annotated genome assemblies or differential gene expression results. …

… is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in … We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to … possess genomes and particle sizes that rival those of cellular organisms. Giant viruses challenge the traditional …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the …

… management, processing and visualization of “big data,” and artificial Intelligent/machine learning approaches in data … types) (Nature Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes from … and comparative analysis of thousands of archaeal and bacterial type strains ( GEBA-type strains project ), the …

… to request the capabilities and expertise of both the Joint Genome Institute and the Molecular Foundry in one research … technologies that address challenges in the sourcing, recovery, and utilization of critical minerals and … provides customized analysis, the JGI also participates in publication of results. Go here for a video and Q&A with …

… of bacteria and archaea in their natural environments using single cell approaches. This includes linking strain-level genetic … laboratory isolation and genome sequencing of underexplored bacterial and archaeal lineages that are important for … space:  The JGI generates reference genomes from diverse bacterial and archaeal lineages to improve phylogenetic …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and … genomics-powered tools to study this complexity, including single-cell and spatial transcriptomics barcode-based …

… this collection in total contains approximately 100,000 bacterial strains, and a hundred thousand fungal strains. … DAN: Yeah, I don’t think your lab is gonna tackle that single handedly, right? So, yeah, getting the community … area I see a great potential will be machine learning and artificial intelligence. I would view that will be the next …