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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome …
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Partnerships: Adopt-A-Genome
… that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … A primary purpose of this project is to bring educators from a broad range of … sequence data, employing IMG data and tools for comparative analysis, visualization and interpretation using public …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological … cutting-edge sequencing technologies and advanced genomic analysis to explore the rich diversity of fungi and algae. …
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Environmental Genomics Group
… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to improving our …
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Microbial Program
… focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … associated with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and inter-organismal …
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Industry Engagement Program
… joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the … and environmental samples by using advanced computer analysis coupled with liquid chromatography mass … large-scale data repositories for genome information with analysis tools for mining and prediction The JGI works in …
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Publications
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Data Policy
… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … to have a limited and time-sensitive protection of certain types of data to support their use by those generating data. The JGI Data Policy applies to research data and analysis products (referred to as “data” for the remainder …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or … genes that are signatures for the presence of a specific type of biosynthetic gene cluster. And antiSMASH has a …
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Metabolomics
… functional genome annotation, improves understanding of the role small molecules play in diverse biological … based methods in combination with advanced computational analysis.   Overview of metabolomics products At JGI, … plant), media in which they grow, as well as different types of environments (e.g. soil, lake).  A wide range of …
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User Support Analysis Group
… The User Support Analysis group provides computational analysis for new … projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product …
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Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria
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