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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, … inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … from environmental samples.  … The IMG/M system serves as a community resource for comparative analysis and annotation …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This …
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Publications
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Community Science Program
The Community Science Program (CSP) provides the scientific community at large with … sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … diversity and metabolic potential, with implications for energy production, environmental sustainability, and …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of … algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … We are developing a Heterologous Expression Report Card toolkit (HERC-tk) to enable users to identify the best host …
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Data Policy
Data produced and released by the US Department of Energy … Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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A toolkit for microbial community editing
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome … details, including an overview of our products.  … The MAGI toolkit links metabolomics with genomics data.  This is a …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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