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Publication Policy
… following the guidelines below.  … If you use data from 3 or fewer JGI proposals, include those DOIs in the auspice … v/portal/lookup?keyName=proposalId&keyValue=XXXXXX&groupOnly=1&app=Info where XXXXXX is the WIP proposal ID. Example : … Department of Energy operated under Contract No. DE-AC02-05CH11231.” … All publications using JGI data produced under …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… getting them out to you all. But for now, here is episode 10 of Natural Prodcast, the primer on genome mining. Hey, … Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in … Microbiomes” paper is here . Read the associated JGI news release here . Software we discussed, used for genome …
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CSP New Investigator Call
… proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals for this call may be submitted at …
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New Lineages of Life Group
… metagenomics. Nature Reviews Microbiology volume 20, 721–736 JC Villada, F Schulz (2022) The endosymbiotic box of … through global metagenomics. Nature. 578 (7795), 432-436 Schulz et al. (2020) Advantages and limits of …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Great Salt Lake, which is a hypersaline terminal lake about 30 minutes away from campus. And we’re finding some really, … And you have these different types of particulate like 2.5, 10 PPMs and just the size of the particle and how far they … there a way to do that? DAN UDWARY: Well, so there’s good news and bad news on that. So one of the things that we’re …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I … that the JGI’s Annual User Meeting is coming up, August 30th through September 1st. Three days of great science, and … never forced it on me, but we always had these scientific news magazines lying around at home. And I would just pick …
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Natural Prodcast Episode 7: Ben Shen
Right, because they’re so reactive. BEN: …going back to the 1950s. But the structure of which was not known until the … So I wanted to ask you also about – because you were in the news recently – TSRI has acquired the Pfizer strain … genome, the genome predicts they often can produce around 30 – more than 30 compounds. So, this was a complete …
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Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
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Natural Prodcast Episode 6: Marc Chevrette
… project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s also … have no extra genes hanging around, they still dedicate 20-30% of their genome to secondary metabolism. So it’s very … that’s really popped up at funding agencies and the popular news recently because a lot of soldiers in the Iraq and …
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Natural Prodcast Episode 17: Cassandra Quave
Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week is Professor Cassandra Quave … scientists to think about, because if you look at the 36 hotspots, or terrestrial biodiversity hotspots that we … plants and bringing them back is not your jam, the good news is there’s this amazing resource that can be provided …
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Natural Prodcast Episode 12: Nadine Ziemert
… of secondary metabolism. Welcome back. This will be episode 12 of Natural Prodcast. And it’s our conversation with … Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … all these 120 genomes, and each of them have– I don’t know– 30 gene clusters or so. So I think I spent two years only …
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A Plant Root Atlas for Tracking Developmental Trajectories
… patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and combining the information with … type and cell identity mutants . Dev Cell. 2022 Feb 28. S1534-5807(22)00033-8.doi: 10.1016/j.devcel.2022.01.008 … Single-Cell Data Viewer Tool on Phytozome Biosciences News:  Plant Single-Cell Solutions for Energy and the …
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