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… welcome back to Natural Prodcast, and this will be episode 11. This continues our little sprint on genome mining. In … microbiome field, many people had just been looking at like 16S taxonomic profiles of these communities looking at who …

… so there are– I hesitate to make a guess but maybe 50 to 100 different strains and they are in individual tubules.  … in the field, these glacial bacteria grow slow and it’s not 100% clear that we know what their biological activities … call this the needle in the Haystack. Because if we have 10,000 features which one do we look at because we are a …

… metagenomics. Nature Reviews Microbiology volume 20, 721–736 JC Villada, F Schulz (2022) The endosymbiotic box of … components. Science, 356 (6333), 82-85 Schulz et al. (2016) A Rickettsiales symbiont of amoebae with ancient … infecting the nucleus of amoebae. The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach …

And you have these different types of particulate like 2.5, 10 PPMs and just the size of the particle and how far they … there a way to do that? DAN UDWARY: Well, so there’s good news and bad news on that. So one of the things that we’re … happening. And so we should have somewhere around 10, 11, 12 million BGCs in the database on the release, and …

… recruit new talent for biosciences.  Adopt-a-Genome has:  11 CSU educators working with the JGI 120 genomes claimed … Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522 R Robertson, et. al.  … Draft Genome Sequence of  Trichococcus flocculiformis DSM 2094T Isolated from Bulking Sludge in Germany. A. Amin, et. …

Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ iNaturalist observations …

Wisconsin. Like we discussed in the primer podcasts ( part 1 here , part 2 here , and part 3 here ), which you should … do you check if they’re there? Like we always talk about 16S for bacteria, but we don’t talk about it so easily with … fungi, you look at the ITS region. That’s equivalent to the 16S. However, we did have a talk by Mark Stadler today who …

… this is Challis et al, Chemistry and Biology, 2000, 211-224, 7:3 And so, you can then make predictions about … Microbiomes” paper is here . Read the associated JGI news release here . Software we discussed, used for genome … reviews of genome mining: Ziemert, Alanjary, and Weber’s 2016 overview of genome mining (open access) The Challis/Corre …

… that there was almost nothing. Now, this is back in the 1970s. So, I thought to myself, maybe I can use my … course using modern phylogenetic tools measuring genes, the 16S gene, and comparing it with everything that’s known. So … at that, which allows you to compare the ribosomal gene, 16S gene, to all other bacteria known. And these, all 20, …

Antarctic Museum (MNA-CCFEE). … The JGI was created in 1997 to unite the expertise and resources in DNA sequencing, … Laboratory, and Los Alamos National Laboratory.  In 1999, to accelerate the completion of DOE’s commitment to … publish the sequence analysis of the target chromosomes 5, 16, and 19, in the journal Nature . Following this …

… of secondary metabolism. Welcome back. This will be episode 12 of Natural Prodcast. And it’s our conversation with … Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … all these very, very related genomes, right – on their 16S level, they’re almost identical! But seeing all these …