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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … international move. You had an interstate move. We’ve had forest fires here in California and, uh– ALISON TAKEMURA: I … it’s like these molecules can just mediate so many kinds of interactions. And by understanding them, we can promote the …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … metabolism. Hey everybody, this is Dan with episode 13 of National Prodcast. This continues our little section … symbiont, for example, of an ant. So these are very stable interactions that have been evolving for 300 million years, …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … experimental approaches to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, the Program aims to unlock the fundamental …
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data standards, … (ESNet), the JGI has unique access to both expertise and infrastructure to facilitate these efforts. Particular areas …
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Plant-Microbial Interactions Group
… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … root cross-sections. … 10.1038/s41579-020-0381-4 10.1038/s41396-020-0637-z 10.1038/s41477-024-01666-3 … Sai Prahabkar (UC Merced Intern) … Plant / Bacteria / Viral Interactions … Single-cell characterization of …
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Natural Prodcast Episode 23: Aaron Puri
… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … then we were using these probes to look at host pathogen interactions mostly with like enteric bacteria. And I really … expression hosts like maybe in many fields now like in cyanobacteria or even [ Streptomyces ] coelicolor you’ll see …
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Metabolomics Program
Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to … enhance our understanding of genome science, organisms, and ecosystems at the molecular level. Integrating genomics with … plants and microbes, and understanding microbiome interactions. The  insights derived are crucial for …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … of terrestrial biogeochemical cycling and inter-organismal interactions. These insights are crucial for addressing key … to complete large-scale sequencing projects, including 10,000 Actinomycetota strains and 10,000 type strains. These …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … al.  2023 . Microbiology Resource Announcements. 2023 12 (10), e00548-23 Whole genome sequence of the denitrifying … Berner, et. al.  2024.  Microbiology Resource Announcements 13 (10), e00517-24 Draft genome sequence of  Nitrobacter …
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Plant Program
… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to create renewable energy … biology to ecosystem processes through model laboratory ecosystems. They are small plastic growth chambers where …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … So I wanted to ask you also about – because you were in the news recently – TSRI has acquired the Pfizer strain … what really fascinated me – the pinene – if you go to the forest, you have this very refreshed feeling, right? That’s …
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … the sponges talk to each other? ERIC:   He was looking at interactions between sponges and other organisms. So one of … we were working with tunicates, and tunicates living with cyanobacteria, and various other types of bacteria. So I got …
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