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DNA Synthesis Program
… of biofuels, biochemicals and other bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a … the program enables the design and synthesis of complex genetic pathways and biosystems. It The program fosters … innovative screening technologies and computational tools that enhance biofuel production and biosystem design. …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… about natural products and the science and scientists of secondary metabolism. Welcome back for our second season of … ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … We compare those sequences with our sequence. The premier tool for that these days, the one that pretty much everybody …
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Synthesis
… Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … user project design, assembly, and quality control Strain Engineering Group : a research & development group and focused on new technologies and optimizing tools — including strain engineering — to make them more …
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Strain Engineering
… to bacteria, yeasts and algae previously with little to no genetic tools enabling heterologous expression and functional exploration.  The developed strains …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae … The Secondary Metabolites Program targets the vast and … support users, our efforts include developing computational tools for predicting biosynthetic gene clusters (BGCs), …
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Natural Prodcast Episode 14: Nigel Mouncey
… DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . … my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for a couple … using these together along with all of our computational tools to really build out much more of an integrative …
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Protocols
… by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols can be found here . DNA Extraction Protocols: … Tips for High Molecular Weight DNA extraction: … RNA Extraction Protocols: …
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Metagenome Program
… to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing … evolution. The Program focuses on developing computational tools and visualization resources that support user analysis …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse … biogeochemical cycling and inter-organismal interactions. These insights are crucial for addressing key … The Microbial Program focuses on using advanced sequencing technologies to explore …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of …
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Fungal & Algal Program
… and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and … that enable fungi and algae to play a vital role in carbon cycling, biodegradation and biogeochemistry. This research helps translate their … fungal and algal pangenomes, and integrate multi-omics tools to enhance functional studies. These efforts seek to …
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Frequently Asked Questions: Project Management
… Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA Synthesis projects: Miranda Harmon-Smith Metabolomics projects: Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, including a downloadable …
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