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Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … associated viruses and mobile genetic elements. Beyond exploring and characterizing microbial diversity, work in … catalog of viral, microbial, and microeukaryote genomes and mobile genetic elements, linked to custom …

… natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying … carbon, helping to regulate Earth's carbon balance, to exploring the genetic basis of how plants have naturally … and environmental sustainability. … Plant Flagship Genomes are selected through discussion with the JGI Plant …

… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … culture collections to produce hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm … for microbial eukaryotes, build fungal and algal pangenomes, and integrate multi-omics tools to enhance …

… data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The Integrated Microbial Genomes group is focused on:  Developing state-of-the-art … Development and maintenance of the Integrated Microbial Genomes (IMG) data management system … As part of this …

… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though not … has:  11 CSU educators working with the JGI 120 genomes claimed (or about one per student) Seven …

I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … so many bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from … then, that we try to find biosynthetic gene clusters in genomes is by homology search. We’re building on the backs …

DNA Synthesis Platform capabilities support researchers exploring how to convert sequence into functional …

The JGI's DNA Synthesis Science Group supports researchers exploring how to convert sequence into functional … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated … Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and genome-centric …

… catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal lineages to … analysis and annotation of all publicly available genomes from three domains of life. It provides tools for …

… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture microbial and …

… almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … ALISON: Marcy, is that something that your lab is exploring?  MARCY: Mm-hmm, so this gets back to Dan’s … your approach to that and what you guys do when you’re exploring your systems. Because I think the JGI has a little …

… and a tool for predicting natural product structures from genomes. And I was writing grants furiously to try to get … a number of years earlier as one of the first Streptomyces genomes that had just not  been released yet. And there was … collaborators have a fantastic set of software tools for exploring secondary metabolite biosynthetic gene clusters …