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The JGI’s Microbial Program focuses on using cutting-edge sequencing, … enhances our understanding of terrestrial biogeochemical cycling and inter-organismal interactions. These insights … environmental challenges, such as improving soil health, carbon sequestration and bioeconomy applications. The …

… going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have … and work within the DOE emission space of bioenergy, carbon cycling, biogeochemistry, bioproducts. So we cannot …

… to unravel functional capabilities of plants, microbes and microbial communities, global carbon and nutrient cycling, and biogeochemistry — questions … is no cost to the user and no granting of funds. … For the CSP Large Scale call, a Letter of Intent (LOI) is required …

The CSP New Investigator Call is for investigators and research initiatives new to the JGI. … PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide …

The CSP Functional Genomics call is to enable users to perform … genomics research and to help them translate genomic information into biological function.  The emphasis is on projects …

Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and … genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during simulated range shifts of plant-fungal …

FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal … target is based on 98% of the total available hours.   FY 2021 DOE Metrics There were 2,180 unique* JGI users in … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. …

… that enable fungi and algae to play a vital role in carbon cycling, biodegradation and biogeochemistry. This research … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and …

… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted … parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … Genomics group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will … of Energy Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though …

Research in the Eloe-Fadrosh group focuses on using genome-resolved … of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … e01280-22. 10.1128/msystems.01280-22 Clum, A. et al. (2021)  DOE JGI metagenome workflow …

Biology is currently experiencing a revolution brought on by rapid developments in … bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et …