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… biology, modeling and biodesign — questions of relevance to DOE’s Biological and Environmental Research (BER) program … any aspect of these mission areas, priority will be given to projects that address the areas of special emphasis that … metabolomics and analysis will be provided for free to the PI by the Department of Energy’s funding of the JGI. …

… interview with my co-host Alison Takemura, who’s moved on from JGI to do real journalism, and we wish her all the … going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have …

… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties …

… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying … provides high-quality, large-scale genomic data to advance microbial research that drives sustainable solutions in …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … talent for biosciences.  Adopt-a-Genome has: ~20 faculty from institutions across the country Efforts in ongoing … up-to-speed with some of the latest developments in microbial genomics, metagenomics, and computational biology, …

… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and … Proposers are encouraged to review the JGI’s sample requirements . Samples that are … For general questions, please reach out to Christa Pennacchio, Project Management Office. For …

… parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The … of phage and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these …

… The CSP New Investigator Call is for investigators and research initiatives new … PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide … Proposers are encouraged to review the JGI’s sample requirements . Samples that are …

… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … Program focuses on the high-throughput sequencing of microbial communities to uncover the complex interactions …

… data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find novel functions that may impact microbiome structure …

… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and … calls. These documents have been shared with permission from the PIs who drafted them.  …

… target is based on 98% of the total available hours.   FY 2020 DOE Metrics There were 2,038 unique* JGI users in … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. … Hours reflect a delay in implementation of the LIMS from Q2 to Q3. As a result of the delay in the LIMS …