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The JGI’s Microbial Program focuses on using cutting-edge sequencing, … and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, …

… going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. So …

The CSP Functional Genomics call is to enable users to perform …

… to unravel functional capabilities of plants, microbes and microbial communities, global carbon and nutrient cycling, … is no cost to the user and no granting of funds. … For the CSP Large Scale call, a Letter of Intent (LOI) is required …

The CSP New Investigator Call is for investigators and research … PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide … a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … of Energy Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though …

Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … experimental approaches to assess microbial activity across ecosystems.  By studying microbial communities and …

… genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … sequenced at the JGI. IMG/M is also open to scientists worldwide for the annotation, analysis, and distribution of …

… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. Vyshenska, Dariia et al. (2023)  A standardized …

Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and … genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during … soil communities with high and low carbon use efficiency across differing moisture treatments … Metabolic processes …

… development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working … and environmental sustainability. … Plant Flagship Genomes are selected through discussion with the JGI Plant … Gene Atlas initiative develops gene expression catalogs across JGI Plant Flagship speciesspecies, using …

… target is based on 98% of the total available hours.   FY 2020 DOE Metrics There were 2,038 unique* JGI users in … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. … the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new …