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Natural Prodcast Episode 18: A CSP Primer
… If you stick around for the next few months, you’re going to hear my last interview with my co-host Alison Takemura, … listener, then you’ll recognize this material, though my show is a little more free-form, and this is the longer cut … going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with …
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new … PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide … Proposers are encouraged to review the JGI’s sample requirements . Samples that are …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and … Proposers are encouraged to review the JGI’s sample requirements . Samples that are … For general questions, please reach out to Christa Pennacchio, Project Management Office. For …
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CSP Large Scale Call
… biology, modeling and biodesign — questions of relevance to DOE’s Biological and Environmental Research (BER) program … any aspect of these mission areas, priority will be given to projects that address the areas of special emphasis that … metabolomics and analysis will be provided for free to the PI by the Department of Energy’s funding of the JGI. …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … follow the steps outlined below. Click the drop-downs to learn more about each step in the process. If you have … and PacBio sequencing workflows and provide guidance as to how to perform sample QC prior to shipment: Importance of …
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How To Use Our Systems
… and its curation in our core processes. This allows us to provide diverse scientific communities with large amounts … high-quality data and metadata, and connect our data to the broader biological data ecosystem. Our community of … tens of thousands of researchers. The JGI is always seeking to better understand our broader community of users. Each …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental … program investigates the biological mechanisms that enable fungi and algae to play a vital role in carbon cycling, … studies. These efforts seek to improve understanding of how fungi and algae contribute to ecosystems and industries. …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total* … target is based on 98% of the total available hours.   FY 2020 DOE Metrics There were 2,038 unique* JGI users in FY2020 , which includes Principal Investigators (PIs), Co-PIs, …
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New Lineages of Life Group
… data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find novel functions that may impact microbiome structure …
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Natural Prodcast Episode 4: Nancy Keller
… So it was great to hear her passion and enthusiasm for fungi. And we talk a lot about some of the technical … conference, which took place a few weeks ago, in January of 2020. So, you might hear us referencing a conference, and …   DAN: I guess I wanted to start, maybe just by asking you how did you get into the field of natural products?   NANCY: …
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Natural Prodcast Episode 2: The Primer, Part 2
… part 2 of our “primer” episode, so if you ended up here somehow without having listened to the first part, you might be … bacterial sacred metabolite, and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, … It looks like a bunch of colonies on a petri dish. It’s a black and white photo. It almost looks like the moon, …
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