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Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi … fostering a bioeconomy powered by nature’s resources. … The Fungal & Algal Program harnesses cutting-edge sequencing … provides data access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to …
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Natural Prodcast Episode 18: A CSP Primer
… going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … And I think also the quality that we provide. So for fungal and for a lot of our eukaryotic genomes, all our … into our integrated microbial genomes system, which is our comparative analysis system. Once that is completed, the …
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research … PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide … a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform …
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CSP Large Scale Call
… is no cost to the user and no granting of funds. … For the CSP Large Scale call, a Letter of Intent (LOI) is required …
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Fungal & Algal Program User Advisory Committee
The Fungal & Algal Program Advisory Committees is chartered by …
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DOE Metrics
… the return-to-work plan in response to the pandemic.   FY 2019 Number of Unique Users There were 1,933 unique* JGI users in FY2019 , which includes Principal Investigators (PIs), Co-PIs, … % of Goal Goal (hours)** Actual Total Actual % Goal FY 2019 Total 242.0 326.490 134.9% 8,584 8,712 101.5% Q1 2019 …
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Microbiome Data Science Team
… (Nature Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in the group include the sequencing and comparative analysis of thousands of archaeal and bacterial …
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Examples: Successful LOIs & Submissions
Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating … soil carbon storage during simulated range shifts of plant-fungal symbionts … Elucidation of the gene regulatory …
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Natural Prodcast Episode 11: Marnix Medema
… of these crazy genes, some of these enormous genes that encode these very large enzymes. And I was like, OK, wow, … are protecting the plants against pathogens. So usually fungal or oomycete pathogens. In this case they worked on a … sugar beets against Rhizoctonia solani , which is a big bad fungal pathogen. And they showed very clearly that this was …
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Environmental Genomics Group
… microbial lineages, and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully … Nov 9. doi: 10.1038/s41587-020-0718-6. Ladau, J. et al. (2019)  Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology . Trends Microbiol. 10.1016/j.tim.2019.03.003 Eloe-Fadrosh, Emiley A. et al. (2016)  …
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Partnerships: Adopt-A-Genome
… program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review … from sequence data, employing IMG data and tools for comparative analysis, visualization and interpretation using … & Microbiomes system ( IMG/M ) supports the annotation, comparative analysis, and distribution of prokaryotic …
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