Search

The CSP Functional Genomics call is to enable users to perform …

… going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have … and by completion, we define completion as all the analysis tasks being done and the data being released. For example, …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by … applications. By expanding our knowledge of microbial functions and interactions, the Microbial Program supports …

… to unravel functional capabilities of plants, microbes and microbial communities, global carbon and nutrient cycling, … is no cost to the user and no granting of funds. … For the CSP Large Scale call, a Letter of Intent (LOI) is required …

The CSP New Investigator Call is for investigators and research … PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide … a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed …

Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and … … Adaptive strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during …

… target is based on 98% of the total available hours.   FY 2018 DOE Metrics There were 1,882 unique* JGI users in … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational …

… hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with important … new CRISPR-Cas types) (Nature Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et …

We then investigate the coding potential to find novel functions that may impact microbiome structure and … binning of a giant virus. mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature Communications. 9 (1), 1-9 Schulz …

… genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … By understanding how microbes contribute to ecosystem functions, the Program helps drive innovations that could … genomes and mobile genetic elements, linked to custom interfaces and visualization tools for user analysis. …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will … analysis, visualization and interpretation using public datasets.  … The Integrated Microbial Genomes & Microbiomes … of prokaryotic microbial genome and microbiome datasets. It includes JGI-sequenced and publicly available …

… in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … the Hungate1000 Collection.” Nat Biotechnol 36(4): 359-367 (2018). Woyke T ., Doud D. F. R., Schulz F. The trajectory of microbial single-cell sequencing. Nat Methods 14(11): …