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… going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. So … So the minimum request is 100 kb. The maximum request is 500 kb. DAN UDWARY: For DNA synthesis. MIRANDA HARMON-SMITH: …

The CSP Functional Genomics call is to enable users to perform …

The CSP New Investigator Call is for investigators and research … PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide … a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed …

… is no cost to the user and no granting of funds. … For the CSP Large Scale call, a Letter of Intent (LOI) is required …

The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … culture collections to produce hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm …

Goal (hours)** Actual Total Actual % Goal FY 2024 Total 650.0 870.574 134% 8,784 8,688 101.2% Q1 2024 162.5 197.381 … target is based on 98% of the total available hours.   FY 2018 DOE Metrics There were 1,882 unique* JGI users in … the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with important … Almeida A, et al. (2020) A unified catalog of 204,938 reference genomes from the human gut microbiome. Nature …

The metadata then goes into iNaturalist. Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ … a scalable solution for production of high-quality fungal reference genomes, this program is an important initiative …

Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating … interactions in Antarctic cryptoendolithic communities … CSP Large-Scale LOI #1 … CSP Large-Scale LOI #2 … CSP New …

… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … phylogenetic relationships and to provide valuable reference genomes in under-populated areas of the tree of … the Hungate1000 Collection.” Nat Biotechnol 36(4): 359-367 (2018). Woyke T ., Doud D. F. R., Schulz F. The trajectory of …

… out where I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … from the GEM catalog (in green) and previously existing reference genomes (in gray). Around the phylogenetic tree, …

… almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … of her work on molluscs and their cyanobacterial feeding preferences A 10″ Simple Rules” article on increasing computational skills among biologists JGI CSP Proposal: Metagenomic mining of natural product …