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Natural Prodcast Episode 10: A Primer on Genome Mining
… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural products and the science and scientists of secondary metabolism. Welcome back for our second season of … more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes …
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Sequencing Technologies & Products
… which includes the Sequencing Technologies team, relies on collaborations with Science Programs and Operations teams to enable the JGI’s focus on expanding molecular … profiling transcription factor binding sites across entire genomes. This technology has been further scaled to a …
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to improving our …
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New Lineages of Life Group
… Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome …
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JGI Portals
… new algorithms, models and tools in support of DOE mission priorities. Data discoverability and accessibility are … for further science.  NOTICE The Data Portal application has replaced the JGI Genome Portal . Book a session via the appointment calendar … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and … The Metagenome Program focuses on the high-throughput sequencing of microbial communities …
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Natural Prodcast Episode 14: Nigel Mouncey
… DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . … off today with my interview with the Director of the Joint Genome Institute and head of the Secondary Metabolites … normally run into or interact with in the course of your daily work.  DAN: Sure.  NIGEL MOUNCEY: I think an …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably never heard of trifoliate orange. Otherwise known as  Poncirus trifoliata , it’s an evolutionary cousin of the  …
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DNA Synthesis Program
… of biofuels, biochemicals and other bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing … Synthesis Program plays a central role in advancing functional genomics, focusing on developing genetic systems that …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse … biogeochemical cycling and inter-organismal interactions. These insights are crucial for addressing key … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal …
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