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Calculating the Costs of Multiple Switchgrass Gene Copies
… have discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its habitat range. But at … A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for … biofuel yield through a changing future. Switchgrass has multiple naturally occurring ploidy levels, called …
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Plant-Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better … a bioenergy plant single-cell atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled …
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Publication Policy
… acknowledgment (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … should specify the collaborative nature of the project, and authorship is expected to include all those contributing …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for a couple … to create more product or you’ve been able to lower the costs.  DAN: Do you have any – or the ability to say, like, …
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Products
Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … product audit to analyze the scientific value, demand, and costs of current offerings in the JGI product catalog. As a … DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in length, …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required … ACADEMIC, NON-PROFIT or COMMERCIAL PROPOSALS with MULTIPLE COLLABORATORS: The submitting researcher’s home …
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … … from any institution type and at any career stage. Generally, most users are able to work with Berkeley Lab.  …
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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … to regulate Earth's carbon balance, to exploring the genetic basis of how plants have naturally adapted to varied … regions of interest and gene copy number variation across multiple genomes. It provides the ability to discover …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
In honor of the JGI's 25th anniversary in 2022, we have revisited a … that will help solve energy and environmental challenges. Switchgrass is a native, shrubby grass that can grow … large polyploid genome, which means most genes are found as multiple copies across the chromosomes. In a follow-up study …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells us about forthcoming … encoded by them. Well, they had come out over actually multiple decades of time. But still to be able to use those …
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Exploring the Diversity of the American Prairie’s Switchgrass
A tall native plant of the North American prairie, switchgrass ( Panicum virgatum ) has long been a tantalizing … traits — height, biomass, hardiness to cold, etc. — to its genes. The undertaking took shovels, trucks — and more than …
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FICUS
… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … the capabilities across at least two of the facilities, and generate datasets beyond what each of these facilities could …
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