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Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … and PacBio sequencing workflows and provide guidance as to how to perform sample QC prior to shipment: Importance of …

… our software, including BBTools ? Click to find that on our archive site.  …

The mission of the Joint Genome Institute is to serve the … plan is written into a Statement of Work document. … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on a regular basis, in accordance with JGI’s data …

The Sequencing Technologies Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological discovery by the JGI and external DOE users. Adopting the …

FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours … and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2024 DOE … Operating Hours** Goal Actual Total Actual % of Goal Sanger* 454 Illumina Goal Actual Total Actual % Goal FY 2010 …

… frontier.  Learn more about the JGI's activities in this space.       Learn more about internship programs we work … The CalTeach Summer Research Institute (SRI) at UC Berkeley is a program designed to foster a profound understanding of …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence … Miranda Harmon-Smith, Synthetic Biology Project Manager . … How To Create an Annotated GenBank File There are several … M. Wayne Davis or commercial options include SnapGene . … How To Use ApE To save your ApE file as a Genbank file, …

… to DOE mission is appropriate. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … Photon Source Capabilities for FICUS Research describes the resources available from all the facilities participating in … Molecular Biology . … Accessing NEON’s Environmental Sample Archives, Applying JGI and EMSL Omics Tools introduces the …

… environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the … solutions, fostering a bioeconomy powered by nature’s resources. … The Fungal & Algal Program harnesses … studies. These efforts seek to improve understanding of how fungi and algae contribute to ecosystems and industries. …

… the future. I highly recommend it. I’ll link to it in the show notes. Which I’ll remind you, you can always find at … I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE ZIEMERT: Yes. … fosmids. And we sequenced the whole fosmid at the time with Sanger sequencing, and really going from the ends and …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in … and many other applications. By understanding how microbes contribute to ecosystem functions, the Program … focuses on developing computational tools and visualization resources that support user analysis of …

… sequences. As always, you’ll find transcripts and show notes with links to lots of other resources, especially for these primer episodes, if you want … really the same kind of thing. Before the age of genome sequencing, we had to basically break up the pieces of DNA …