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Microbiome Data Science Team
… discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on … springs.  Nature Commun. 7:10476 Varghese NJ,  et al. (2015) Microbial species delineation using whole genome …
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Natural Prodcast Episode 10: A Primer on Genome Mining
Natural Prodcast, a podcast about natural products and the science and scientists of secondary metabolism. Welcome back … to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … especially for these primer episodes, if you want to dive deeper on all this at http://naturalprodcast.com . And then …
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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our … user projects accepted FY22 and later through the Community Science Program (CSP), Facilities Integrating Collaborations …
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Natural Prodcast Episode 20: Brian Bachmann
… you can always find at naturalprodcast.com or through the JGI website at jgi.doe.gov . There’s a lot more to talk … joining Vanderbilt who were doing drug discovery and neuroscience and other areas that were being very successful and … have to do a 10,000-fold dilution to plate that out. The deeper you go in the cave, the less dilution. You can be …
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Science Programs
The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the scientific impact of user projects, develop cutting edge …
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has unique access to both …
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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific … Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science …
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DOE Metrics
… hours.   FY 2024 DOE Metrics There were 2,456 unique* JGI users in FY2024 , which includes Principal Investigators … target is based on 98% of the total available hours.   FY 2015 DOE Metrics There were 958 unique* JGI users in FY2015 … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational …
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JGI Portals
Our data platforms are a key resource for the broader scientific … — top-quality genomic data, open to all researchers. … The JGI Genome Portal provides unified access to all JGI genomic … orthology/paralogy relationships as well as insights into clade-specific novelties and expansions.  … The SMC …
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Metagenome Program
… flow. One of the key goals of the Program is to develop a deeper understanding of microbial community assembly and … environmental viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by enabling comparative …
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Natural Prodcast Episode 11: Marnix Medema
Natural Prodcast, a podcast about natural products and the science and scientists of secondary metabolism. Hey there, … all based on antiSMASH results. And so if you want to do deeper analysis on things, then you’re staying in the “BiG” … of question have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is …
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Community Science Program
The Community Science Program (CSP) provides the scientific community at … sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  … call is for projects that translate genomic information into biological function. The  New Investigator and …
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