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The JGI’s Microbial Program focuses on using cutting-edge sequencing, … provides high-quality, large-scale genomic data to advance microbial research that drives sustainable solutions in … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, …

… genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The Integrated Microbial Genomes group is focused on:  Developing …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and …

… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and … biocontrol agents dramatically affect plant health. The  1000 Fungal Genomes Project is a five-year project to …

Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to assess microbial activity across ecosystems.  By studying microbial …

… exploration.  The developed strains represent an additional phase of user-accessible project types, in which DNA-based … integrated into a taxonomically diverse suite of microbial chassis strains for elevated opportunity for …

… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … metagenome workflow . mSystems 6(3). 10.1128/MSYSTEMS.00804-20 Nayfach S et al.  A Genomic Catalog of Earth’s …

… % Goal FY 2025 Total 700.0     8,585     Q1 2025 175 190.304 109% 2,164 2,136 98.7% Q2 2025 175 152.100 87% 2,117 2,112 … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. … the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new …

… in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … and sequencing of rumen microbiome members from the Hungate1000 Collection.” Nat Biotechnol 36(4): 359-367 (2018). …

… and quality of finished product depend on genome. Selected genomes will be improved based on feasibility and scientific … amino acids, nucleosides, etc) metabolites using normal phase chromatography coupled to tandem mass spectrometry … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial …

I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … in Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial …

… to try and create an open source database of all known microbial natural products. So if you think about natural … accurate. And so we told people that if they would curate 1000 entries, that that would earn them authorship of the … the, sort of, structure-first individual compound discovery phase. And that there was a bit of a plateau there where …