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Plant Program
With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …
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Plant Program User Advisory Committee
The Plant Program Advisory Committee is chartered to offer … on the effective management and strategic objectives of the plant program. The committee serves as the program's key …
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …
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Sequencing Technologies
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Products
… sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs … contigs. Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun …
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Natural Prodcast Episode 17: Cassandra Quave
… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? …
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Natural Prodcast Episode 4: Nancy Keller
… out introns and dealing with, you know, weirdness in the sequence. You know, some clusters are not clustered…   … it so easily with fungi. So…   NANCY: Yeah, I don’t know why. For example, with that – actually there’s a good talk … of insects are sensitive to mycotoxins and if you have a seed – I mean, this is bandied about – let’s say that has a …
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Project Management Office
Pennacchio PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager …
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Natural Prodcast Episode 11: Marnix Medema
… about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … biological perspective, like what was this bacterium, and why did your group want to study it? Marnix Medema: You mean … who share an idea, and then you extend with kind of a seed community. Maybe 10 or 20 people who are enthusiastic …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … in order to challenge or kill off competition, right? And plants do the same sorts of things. And then, bacteria often … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene …
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How to Submit Sequencing Samples
… pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …
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Partnerships Development Team
… atmospheric gas mitigation properties of multiple rice plant growth promotion technologies using methanotrophs. … Anuvia Plant Nutrients is partnering with the JGI to help drive … and Development Agreements … New Leaf Symbiotics … Anuvia Plant Nutrients … 2020 Technology Commercialization Fund …
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