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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …
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Synthetic Biology Lab
We focus our efforts on integrating database mining and sequence design with scaling the production of large, … group is focus on developing methods for converting digital information from sequence databases into biotechnological or environmental …
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Sequencing Technologies
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Plant Program
… facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to … the globe to identify genes to improve our domesticated species.  The program supports the development of … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …
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Natural Prodcast Episode 7: Ben Shen
… the paradigm of how to discover natural products. So, why I’m very excited to be working with Dan, you, with the … develop enabling technologies. ie how to translate the ATGC sequence into discrete small molecules. So, Dan, I’m very … Fleming – the discovery of penicillin from the fungal species – probably told us that fungi could be very …
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Products
… sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs … shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 Fungal Standard Draft Whole genome shotgun sequencing …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… least, talk to us, first about my definitions of things and why I am wrong, and also talk about some of the great … They produce a large array of different molecular species related– chemically related– but nevertheless we did … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the …
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How to Submit Sequencing Samples
… these instructions.) TSCA Form for International Shipments 4) Shipping your samples Send your package on a Monday or … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …
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Natural Prodcast Episode 12: Nadine Ziemert
… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … we’re thinking they’re obligate marine. There’s so far no species or no strains known that really grow in freshwater. … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger …
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Who We Are
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Natural Prodcast Episode 10: A Primer on Genome Mining
… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene … from certain kinds of environments or certain kinds of species or whatever. So for example, if you wanted to go …
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FICUS-NERSC/KBASE
… … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on a regular basis, in accordance with …
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