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… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and …

… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … learned a lot so much history from this conversation about why the ocean was basically unexplored until the 70s, and … forward to seeing the data when it finally gets off the sequencers. The pandemic has obviously slowed JGI down a …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger …

Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological … The team works hand in hand with the Project Management Office to help ensure the JGI’s genomic capabilities are …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene …

Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …

… at JGI start with sequencing, but where else did those sequences go? Like, what are the other scientific tools we … a mixture of, for example, metatranscriptome sequencing, metagenomics, single cell genomics. We even do the flow … that describe the work. In general. Scientific merit and why it’s important. The DOE mission is one of these …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … you maybe explain what’s going on with their biology and why they’re so important to natural products? ERIC:  Sure. … turns a peptide, for example, from a disordered sequence into an antibiotic that kills bacteria through a …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those associated with microeukaryotes, enhances our understanding of terrestrial … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs …