Search

The Metagenome Program uses advanced sequencing technologies to … By understanding how microbes contribute to ecosystem functions, the Program helps drive innovations that could … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

… bobtail squid has two organs that solely house– whose sole function is to house bacterial associates. And so the one … does some really exciting work there. And I thought, well, why don’t we try to go to Alaska and see what we can find … with any kind of gene cluster identification, doing it with sequence alone you have to have some kind of a template to …

… applications. By expanding our knowledge of microbial functions and interactions, the Microbial Program supports … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from … capability of microbial communities based on their metagenome sequence, in the context of reference isolate …

The Community Science Program (CSP) provides the scientific … synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … call is for PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate …

The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … mission relevance , proposed data usage by the applicant/community, and track record of the applicant.  Learn about …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … We then investigate the coding potential to find novel functions that may impact microbiome structure and …

… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger … that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy and … … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on …

… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene … if an order is uncultured (blue; represented only by metagenome-assembled genomes or MAGs) or cultured (gray; …

… about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … biological perspective, like what was this bacterium, and why did your group want to study it? Marnix Medema: You mean … primer episode, we talked about genome mining through some metagenome associated genomes. And yes, antiSMASH is …