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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … files. ApE is an open source desktop application written by M. Wayne Davis or commercial options include SnapGene . … …
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Sequencing Technologies
… next-generation sequencing to enable biological discovery by the JGI and external DOE users. Adopting the latest  …
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Products
… sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs … ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation of a biologically relevant unit from …
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Natural Prodcast Episode 23: Aaron Puri
… of their synthases so that we can start to use the DNA sequence to predict or just understand better the language … your interest in getting into natural products. DAN: Why are you here at SIMB? AARON PURI: Yeah. Thanks Jackie. … episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum sensing circuit that involves …
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How to Submit Sequencing Samples
… process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is … You can view the status of your projects at any time by accessing various reports on the JGI Portal . Use the …
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Complete genome sequence of Mesorhizobium ciceri bv. biserrulae type strain (WSM1271T)
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Who We Are
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FICUS-NERSC/KBASE
… next review cycle. All proposals undergo technical review by JGI staff as well as staff at the other participating … … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on a regular basis, in accordance with …
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Natural Prodcast Episode 12: Nadine Ziemert
… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … around us. And we actually don’t know a lot about them by their mate, what their role in nature, how have they been … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger …
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Natural Prodcast Episode 22: Alison Narayan
… enzymes are, right? ALISON NARAYAN: Yes, and so that’s why I don’t like that sentence. I think that sometimes, we … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh … in depth. So some of these that were initially identified by Russell Cox, like [INAUDIBLE]– DAN UDWARY: Explain to my …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… usage. And I was recently challenged on that on Twitter by Francisco Barona-Gomez. And so he is here to, at least, talk to us, first about my definitions of things and why I am wrong, and also talk about some of the great … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … can just mediate so many kinds of interactions. And by understanding them, we can promote the health and … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene …
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