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… material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … phylogenetic relationships and to provide valuable reference genomes in under-populated areas of the tree of …

… to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and … KBase are designated DOE Office of Science Public Reusable Research (PuRe) Data Resources are authoritative providers …

Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … experimental approaches to assess microbial activity across ecosystems.  By studying microbial communities and their … diversity and metabolic potential, with implications for energy production, environmental sustainability, and …

… energy and ecosystem management. The program aims to generate high-quality genomic datasets, particularly for … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal …

… and a tool for predicting natural product structures from genomes. And I was writing grants furiously to try to get … biological perspective, like what was this bacterium, and why did your group want to study it? Marnix Medema: You mean … similarity to a gene cluster with a known compound from the reference database: It must be identical. It must be that …

… vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … available sequenced algal genomes and genome annotations generated by the JGI and by others. The web portal allows …

Duncan: Yeah. I love actinomycetes. Dan Udwary: Tell us why. I mean, I know, but I think– Alison Takemura: I want to … there have been huge advances in both. The cool thing about genomes is you can, well, if your assembly is good, you can … chemical profile. Dan Udwary: Mm-hmm. Kate Duncan: When we generate that, that’s only a part of the picture. And you …

… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … to a better understanding of microbial communities and ecosystem function.  The Environmental Genomics group also …

… and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, … better understand the plant-associated terrestrial world. Research Team    … Plant microbiomes hold the amazing … experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this …

… to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing … and environmental sustainability. … Plant Flagship Genomes are selected through discussion with the JGI Plant … It provides the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome …

The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique opportunity for researchers to request the capabilities and expertise of … the capabilities across at least two of the facilities, and generate datasets beyond what each of these facilities could …

… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of … learned a lot so much history from this conversation about why the ocean was basically unexplored until the 70s, and … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …