Publications

Yuzon, J. D. et al. (2023) Transcriptomic and genomic effects of gamma-radiation exposure on strains of the black yeast Exophiala dermatitidis evolved to display increased ionizing radiation resistance. Microbiology Spectrum. 10.1128/spectrum.02219-23

Li, J. et al. (2023) Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi. Journal of Fungi. 10.3390/jof9080860

Sahu, N. et al. (2023) Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria. Nature Microbiology. 10.1038/s41564-023-01448-1

de Oliveira, C. M. et al. (2023) Trichoderma harzianum transcriptome in response to the nematode Pratylenchus brachyurus. Biological Control. 10.1016/j.biocontrol.2023.105245

Li, Y. et al. (2023) Plasmid Copy Number Engineering Accelerates Fungal Polyketide Discovery upon Unnatural Polyketide Biosynthesis. ACS Synthetic Biology. 10.1021/acssynbio.3c00178

Gryganskyi, A. et al. (2023) Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned?. Microorganisms. 10.3390/microorganisms11071830

Brown, J. L. et al. (2023) High-quality RNA extraction and the regulation of genes encoding cellulosomes are correlated with growth stage in anaerobic fungi. Frontiers in Fungal Biology. 10.3389/ffunb.2023.1171100

McRae, A. G. et al. (2023) Spray‐induced gene silencing to identify powdery mildew gene targets and processes for powdery mildew control. Molecular Plant Pathology. 10.1111/mpp.13361

Riley, R. et al. (2023) Terabase-Scale Coassembly of a Tropical Soil Microbiome. Microbiology Spectrum. 10.1128/spectrum.00200-23

Carr, E. C. et al. (2023) Characterization of a novel polyextremotolerant fungus, Exophiala viscosa, with insights into its melanin regulation and ecological niche.. G3: Genes, Genomes, Genetics. 10.1093/g3journal/jkad110

Barrett, K. et al. (2023) Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.. Nucleic Acids Research. 10.1093/nar/gkad385

Hage, H. et al. (2023) An HMM approach expands the landscape of sesquiterpene cyclases across the kingdom Fungi. Microbial Genomics. 10.1099/mgen.0.000990