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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for … includes instructions on accessing sample-level reports and tracking statuses.  Please follow the steps outlined below. … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … that grow on one-carbon compounds like methanol and methane. And I really dove into microbial physiology and … the classical example yeah, is biofilm formation. So you’re producing different extra polymeric substances. But if …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use … to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane Metabolism. Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there, and welcome to the … was adjacent to what I worked on, but my experience of how microbes are interacting in the environment like, like my …
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Secondary Metabolites Program
… Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and … Program targets the vast and underexplored reservoir of secondary metabolites produced by bacteria, fungi, algae …
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Publication Policy
… The purpose of this policy is to establish communication norms around … their work, while also adhering to the authorship policies of the journal in which the research is published. The JGI … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …
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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … University in British Columbia, Canada. This is the last of the podcasts we recorded in my hotel room at SIMB, or the … Roger, when we were both postdocs at Scripps Institution of Oceanography. Roger was splitting his time between Bill …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … At the end of the day, all the content produced by microbes the result of millions of years of evolution. And … certain circumstances, for example, if you are a tryptophan-producing organism but you are grown on medium without …
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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … a plant based bioeconomy where plants are a major source of chemical production and contribute to a healthier planet … The Plant Program advances our understanding of plants’ biological and ecological roles to foster …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since I’m off schedule, but this is an important one that wanted to … On this bonus episode of Natural Prodcast, it’s the Self Promotion Episode! Dan … of Utah , about her secondary metabolism research on novel microbes and bioactive compounds in the Great Salt Lake. …
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DOE Metrics
… (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY … platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2025 DOE Metrics There … ** Number of hours a week that sequencing machines are producing data.   FY 2009 Summary Quarter Total Bases …
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