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… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses several …

… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct … Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of microbial … This process enables our users to explore the genetic makeup of microbial communities, shedding light on …

… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … involves both experimental and computational exploration of uncultivated viral diversity, characterization of molecular mechanisms involved … is still limited. One key challenge is to complement diversity surveys ( Who is there? ) with activity …

… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the … of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … my Peace Corps volunteer stint, and that it was in all the maize. So the main food that you ate was called Papa, which … looking at that I’m a very visual person. So, when we make genetic mutants in a fungal isolate, I can see something …

…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national … at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative … as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.    …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … Yeah, bacteria sound like a good place, to me, to look for diversity because there are so many bacteria, because it is …

… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such … that are from candidate phyla, major branches in the phylogenetic tree without cultivated representatives. The “Great …

… Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and … program aims to tap into the largely unexplored biochemical diversity within secondary metabolites, expanding their …

… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological … on large-scale sequencing efforts that survey the vast phylogenetic and ecological diversity of fungi and algae, …

… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, advancing the development of … the program enables the design and synthesis of complex genetic pathways and biosystems. It The program fosters …