DOE Joint Genome Institute

All JGI Features
Home › Items tagged with: Nikos Kyrpides

Content Tagged "Nikos Kyrpides"

GenePRIMP QC tool on EurekAlert

To assist in checking the quality of the microbial genomic DNA sequences generated before they are submitted to the federally funded public archive GenBank, the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has introduced a quality control tool known as the Gene Prediction IMprovement Pipeline or GenePRIMP. GenePRIMP is described in a paper… [Read More]

GEBA project featured in NYTimes

If you want to appreciate the diversity of life on earth, you will need a microscope…. Yet scientists still know very little about our microbial planet. The genomes of only about 1,000 species of microbes have been sequenced. That leaves 99.99999 percent to go. Making matters worse, the genomes scientists have sequenced so far are… [Read More]

Jonathan Eisen, GEBA project in Nature

“The broad brush strokes of microbial diversity are not adequately represented in that first thousand,” says Stephen Giovannoni, a microbiologist at Oregon State University in Corvallis. “It’s absolutely important that we sequence more.” Enter the Genomic Encyclopedia of Bacteria and Archaea, a project spearheaded by the US Department of Energy’s Joint Genome Institute (JGI) in… [Read More]

Nikos Kyrpides and the GSC on GenomeWeb

Genomics “is now mature enough to go ahead and develop all the standards that would facilitate the comparisons across different groups more efficiently, such as standards in gene calling and annotation,” Kyrpides said. Standards development in the area of metadata “is one of the most intensely developing area under the auspices of GSC,” and he… [Read More]

Microbial genomics model on GenomeWeb

Scientists have come up with a way to determine whether marine microbes are specialized to grow in nutrient-rich or -poor environments based on their genomic content, according to a feature article scheduled to appear online this week in the Proceedings of the National Academy of Science. An international research team sequenced and compared the genomes… [Read More]

Genomic model research on Huliq

Cavicchioli and his lab compared the traits of S. alaskensis‘ genome against the genome of Photobacterium angustum, a bacterium collected and sequenced from the warmer, nutrient-rich waters off Sydney, Australia. They then tested the model developed based on these two genomes to successfully predict whether several dozen bacterial samples were those that grow in nutrient-rich… [Read More]

Genomic model research on ScienceCentric

‘The method used by Cavicchioli’s group to predict bacterial habits lends credence to the idea that sequencing cultivated organisms is biased toward sequencing those that thrive in nutrient-rich conditions, even though those that get by in nutrient-poor conditions are more abundant in the environment,’ Kyrpides said. ‘Despite the number of microbial genome projects being done,… [Read More]

Genomic model research on Science Codex

Through a novel genomic approach detailed in the September 7 online edition and on the cover September 14 of the journal Proceedings of the National Academy of Sciences, an international team of scientists led by the University of New South Wales and the DOE JGI demonstrates how the microbial diversity of the oceans can be… [Read More]

Genomic model research on LifeSciencesWorld

Through a novel genomic approach detailed in the September 7 online edition and on the cover September 14 of the journal Proceedings of the National Academy of Sciences, an international team of scientists led by the University of New South Wales and the DOE JGI demonstrates how the microbial diversity of the oceans can be… [Read More]

Genomic model research on ScienceDaily

Through a novel genomic approach detailed in the September 7 online edition and on the cover September 14 of the journal Proceedings of the National Academy of Sciences, an international team of scientists led by the University of New South Wales and the DOE JGI demonstrates how the microbial diversity of the oceans can be… [Read More]