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Frequently Asked Questions: Proposal Submission
… letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call … view the proposal templates, go to the proposal submission page , login using your JGI account (create one here if you … applicants from any institution type and at any career stage. Generally, most users are able to work with Berkeley …
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Natural Prodcast Episode 21: Elizabeth Parkinson
But on the other hand, we're also really interested in enzymes to do some of the reactions that chemists find … allow that to bind. Your receptor also typically has some tag so that you can then pull down the receptor with that … Understanding of Natural Product Induction Betsy's lab webpage and the page on the From Microbes to Medicines outreach …
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Natural Prodcast Episode 22: Alison Narayan
… as exploring and exploiting biocatalysts – that is, using enzymes to do chemical reactions. Obviously, in my work, in … nature does this with such elegance And also to take advantage of the biological properties that these molecules have … So I would say we run enzymatic reactions anywhere from 4 degrees to room temperature, to slightly elevated. We …
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Partnerships: Myco-Ed
Ed Fungal Genomics Education Project MycoCosm MycoEd group page Protocols, teaching materials and bioinformatics …
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Natural Prodcast Episode 18: A CSP Primer
… show notes, which you can always access through JGI’s webpage at  naturalprodcast.com , along with transcripts and … a mixture of, for example, metatranscriptome sequencing, metagenomics, single cell genomics. We even do the flow … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. So …
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Natural Prodcast Episode 23: Aaron Puri
… you could think of designing one of those that can trick an enzyme into thinking that that’s its substrate. And then … bound to it and maybe there will be some a affinity tag or a fluorescent tag, and so you can use that as a … nice summer day in Seattle I think this was like 2013 or 2014. And antiSMASH — I know you’ve interviewed Marnix [Medema] …
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Frequently Asked Questions: Project Management
… access JGI tools and systems. … Go to the “ edit contacts ” page in your account. Use the form to update all information … IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   (citation: … Phytozome (citation: https://doi.org/10.1093/nar/gkr944 ) The following tools are available for functional …
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Publication Policy
… the auspice statement where indicated. If you use data from 4 or more proposals, include those DOIs in a data … Proposal DOIs can be found at the top of the proposal info page on the JGI Genome Portal. You can navigate to the proposal info page using any of the below methods: Search the Genome …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… will be very flexible. They will allow promiscuity and the enzymes are driving the production of these compounds, … the fungal farms from other fungus that want to take advantage of that resource. So in those type of situations, what … and so on. So I have the feeling that we are just at the stage in which synthetic biology could be making secondary …
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Natural Prodcast Episode 17: Cassandra Quave
… of ground – her book, bioprospecting vs biopiracy, early stage drug discovery in general, and a possible data-driven … she has a book called The Plant Hunter and I’ve read all 400 pages of her life and I feel like I have a new friend that …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match characteristics — … process nutrients has a rich back story — they rely on enzymes that have been evolving for billions of years. … located at Berkeley Lab. In addition to providing metagenome mining for computational analysis of the AT enzyme …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… cool. The vanadium haloperoxidases are some really cool enzymes, and it was fun to see that project take shape. … mentor students, teaching classes, and really setting the stage for what I really wanted to do and getting to– so I … you go to the website, which is smc.jgi.doe.gov , the stats page is showing me that right now we have just over a …
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