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Metabolomics Program
… metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy … improving bioenergy crops. … The Metabolomics Program is focused on understanding the critical roles of metabolites in … and a list of scored metabolite matches associated with genes.  … Metabolomics Offerings & Capabilities … …
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How To Use Our Systems
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Natural Prodcast Episode 20: Brian Bachmann
… never to do it natural product discovery ever again. And I came– I had all these– I was really interested in synthetic … Do you go after sediment? Do you go after– if there’s any water– or I guess, when you’re down there, is it something … mining-based approaches are that other than resistance genes, you have no way of knowing of whether or not a …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… where it all started. I think for me, natural products– I became interested in natural products as an undergrad. So for … winter, so a lot of snowpack when it melted– or a lot of water when the snowpack melted went into the lake. And so … organisms actually have quite a few antibiotic-resistant genes in there. And so we’re trying to use those as …
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Data Policy
… protection of certain types of data to support their use by those generating data. The JGI Data Policy applies to … for the remainder of this policy) produced through all user projects accepted FY22 and later through the Community … Program (CSP), Facilities Integrating Collaborations for User Science (FICUS) initiative, Director’s Science (DS), …
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Natural Prodcast Episode 14: Nigel Mouncey
Glaxo before they merged with Beecham and SmithKline and became a much bigger company. But, yeah, he was mucking around … [LAUGHTER] We were just trying to keep our head above water and find cool things. So it was a very research … team who have been really looking at ways to express genes in organisms that haven’t been used for really any …
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Fungal & Algal Program
… and the environment. … Genomic Encyclopedia of Fungi focuses on aspects of plant feedstock health, biorefinery … team in collaboration with the JGI. Conserved Fungal Genes of Unknown Function offer a collection of fungal genes conserved across the fungal tree of life or its major …
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Publication Policy
… by the facility result in scientific publications. JGI users and collaborators have the right to produce … verification, creation of genome browsers, etc. The users, collaborators and JGI together aim to publish the … reflect the respective contributions of collaborators and users. For example if, by agreement with the collaborator, …
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User Programs
… of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.   Proposal Call FICUS CSP … that integrate the expertise and capabilities of multiple user facilities Investigators with DOE mission-relevant … Proposals must be preceded by Letters of Intent and must use a variety of capabilities at two or more user …
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Natural Prodcast Episode 23: Aaron Puri
… and he has a project with the JGI to synthesize the genes for and explore the chemistry of quorum sensing … why not feed it in there. And I went to group meeting and came back and it was just so fun looking at this as someone … some oxygen available that has diffused down through the water column into the sediment and the same thing happens in …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… about you just give us a little bit of your background because you do-- you're classically trained as a synthetic … I guess. So we've also been able to get soils from Purdue campus itself and been able to actually have several … coelicolor versus Streptomyces lividans. They both have the genes. The genes are pretty much 100% identical. We don't …
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Natural Prodcast Episode 11: Marnix Medema
… involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, and newer efforts, like … And it was supposed to be her room now but, well, it became my office due to the pandemic. And she’s sleeping in … work. And that it involves some of these crazy genes, some of these enormous genes that encode these very …
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