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… facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to … and anti-pest compounds.  The program is working to expand genomic resources for key plant species, enhancing our … high-quality de novo assemblies for very large-scale single genomes, based on the JGI assembly tool meraculous. …

Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … of which belong to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this gap. … focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected …

Neri U. et al. (2022) Expansion of the global RNA virome reveals diverse clades of bacteriophages. Cell . … Bowers RM, et al. (2017) Minimum information about a single amplified genome (MISAG) and a metagenome-assembled … Commun. 7:10476 Varghese NJ,  et al. (2015) Microbial species delineation using whole genome sequences. Nucleic …

The program provides high-quality, large-scale genomic data to advance microbial research that drives … of bacteria and archaea in their natural environments using single cell approaches. This includes linking strain-level … genetic variation to ecological niche adaptations.  Single cell sequencing approaches are also used for …

… constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … ecosystem-level impacts of viral infections. The Viral Genomics Group is hosted within the Environmental Genomics group . Research Team … Coclet, C. and Roux, S. …

… and is responsible for the annotation and analysis of (meta)genomic, (meta)transcriptomic, and functional genomic data … and ANI values, we were able to ascertain mis-assignment of species names in genomes spanning nearly 18% of all existing … ANI is used to ascertain the species specificity of single cells and genomes extracted from metagenomes, and …

They produce a large array of different molecular species related– chemically related– but nevertheless we did … for example, in terms of the stereochemistry, such that single changes can lead to a particular high activity … genome mining software we mentioned: “ EvoMining reveals the origin and fate of natural product biosynthetic …

The central mission of the JGI’s Genomic Technologies department is   ensuring users have … to focus on expanding molecular capabilities and functional genomics, scaling capacity through end-to-end automation, and further advancing sequence applications, single cell genomics, DNA synthesis, and metabolomics.   … …

… streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride … the sequence data but none of the chemical data. So in meta-genomic sequences, we don’t even have the organisms. And so … from certain kinds of environments or certain kinds of species or whatever. So for example, if you wanted to go …

… genomics-powered tools to study this complexity, including single-cell and spatial transcriptomics barcode-based … fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host … multipartite phenomenon in additional plant and bacterial species of bioenergy importance. … We are using cutting-edge …

… and biogeochemistry. This research helps translate their genomic potential into practical applications, including … harnesses cutting-edge sequencing technologies and advanced genomic analysis to explore the rich diversity of fungi and … and environmental sustainability. Fungi, with million species, are essential for ecosystem functioning — …

… data analyses compile original data for improving fungal genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, sterilize tissue, isolate … through the links below. Naturalist Myco Ed Fungal Genomics Education Project MycoCosm MycoEd group page …