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Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction …

The JGI’s DNA Synthesis Program supports a wide range of projects, … has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical energy and … for their ability to produce desired chemicals. … The JGI's DNA Synthesis Science Group supports researchers …

FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) … hours.   FY 2024 DOE Metrics There were 2,456 unique* JGI users in FY2024 , which includes Principal Investigators … to analyze complex genomic datasets. [Download PDF]   FY 2014 Overall Sequencing Progress, Updated Quarterly Quarter …

… the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes … and comparative analysis of thousands of archaeal and bacterial type strains ( GEBA-type strains project ), the … and visualization of big data. … Pavlopoulos GA et al. (2023) Unraveling the functional dark matter through global …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … … are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …

… is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in … available at Google Scholar. Schulz, C Abergel, T Woyke (2022) Giant virus biology and diversity in the era of … Scientific reports. 5 (1), 1-10 Schulz et al. (2014) Life in an unusual intracellular niche: a bacterial …

… must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix … with an active JGI User Agreement older than January 2024 will be required to execute a 2024 version .  The recent updates were approved by the DOE to address the DNA Synthesis program. When fully executed, the new User …

… — top-quality genomic data, open to all researchers. … The JGI Genome Portal provides unified access to all JGI genomic databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to eventually replace …

Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable … Berkeley-based artist Nigel Sussman and dedicated at our 2022 Annual Meeting.  … Notable Stories …

… through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., Leahy S. C., Attwood G. T., Teh K. H., … T ., Klenk H. P., Kyrpides N. C. 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree … for new branches on the tree of life. Science. 346:698-9 (2014). Ivanova N.N., Schwientek P., Tripp H.J., Rinke C., …

… needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … . … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the …

The JGI mural on the 3rd floor of the Integrative Genomics Building whimsically references dozens of iconic JGI contributions to advancing the frontiers of … below to learn about the science depicted. The two-story JGI mural was commissioned for the JGI’s 25th anniversary … artist Nigel Sussman. It was dedicated at the 2022 JGI Annual Meeting. …