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When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological … The team works hand in hand with the Project Management Office to help ensure the JGI’s genomic capabilities are …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … you maybe explain what’s going on with their biology and why they’re so important to natural products? ERIC:  Sure. … turns a peptide, for example, from a disordered sequence into an antibiotic that kills bacteria through a …

Microbial communities living near hydrothermal deep-sea vents hold vast potential for bioenergy.   The Science … get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. …

… are hotspots on the ocean floor — underwater volcanoes and hydrothermal vents — where lively microbial communities thrive, and even support entire ecosystems. Hear from researchers Anna-Louise Reysenbach, Emily St. John, Gilberto …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene …

Below is a brief description of the process needed to prepare and ship samples for … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is … by accessing various reports on the JGI Portal . Use the search feature to bring up a list of projects that you are …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs …

… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … Duncan: Yeah. I love actinomycetes. Dan Udwary: Tell us why. I mean, I know, but I think– Alison Takemura: I want to … of almost finished characterizing them. We’ve got genome sequences, which are just incredible. We’ve looked at the …

… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … evolution. It also utilizes advanced tools, including deep learning algorithms for gene annotation and protein … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … the paradigm of how to discover natural products. So, why I’m very excited to be working with Dan, you, with the … develop enabling technologies. ie how to translate the ATGC sequence into discrete small molecules. So, Dan, I’m very …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … large-scale genomic data to advance microbial research that drives sustainable solutions in energy, … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from …