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Plant Program
… development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working … and function. These species are carefully selected by the community to evenly sample the diversity of the plant … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from … from environmental samples.  … The IMG/M system serves as a community resource for comparative analysis and annotation …
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Products
… sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial aggregate, or a …
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Mission
… and professional expertise to support the global research community in studies of complex biological and environmental … in doing so enabled the JGI to be the first to publish the sequence analysis of the target chromosomes 5, 16, and 19, … went on to advance basic science by sequencing scores of microbial species as well as several model organisms and …
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Natural Prodcast Episode 17: Cassandra Quave
… culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? … that we found, indeed, that both formulations had some antimicrobial properties. But the one that was used in …
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Community Science Program
The Community Science Program (CSP) provides the scientific community at large with … aims to advance genome science-based scientific research from a broad range of disciplines. Three calls fall under …
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Partnerships: Adopt-A-Genome
… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will … in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of …
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IMG Group
… genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to scientists … Integrated Microbial Genomes (IMG) system serves as a community resource for analysis and annotation of genome and …
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Metagenome Program
… genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … Program is to develop a deeper understanding of microbial community assembly and microbial interactions, including … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …
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Plant Program User Advisory Committee
The Plant Program Advisory Committee is chartered to offer advice, guidance … on the effective management and strategic objectives of the plant program. The committee serves as the program's key …
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  …
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Examples: Successful LOIs & Submissions
… below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as … calls. These documents have been shared with permission from the PIs who drafted them.  … Elucidating Sphagnum … genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during …
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