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… about microbiology and natural products from the Great Salt Lake, and you’re going to learn, like me, what a “haboob” … is like, what’s your origin story in natural products? Why are you doing this? JACLYN WINTER: I’ll kind of go back … have an E. coli strain that we’ve been working on that we sequenced the genome. And it has 17 resistant genes on a …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …

… libraries for sequencing. They apply Lean Six Sigma practices to process optimization and development approaches, … The team works hand in hand with the Project Management Office to help ensure the JGI’s genomic capabilities are ready …

… for sample collection and storage (from PacBio) Best practices for High Molecular Weight DNA extraction and quality … holidays). We recommend shipping your samples on dry ice.  Please contact your project manager for alternate … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …

… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger … soil. But we also have, in collaboration with other people, lake sediments. We have microbiomes from different …

… ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If “BERSS” … capabilities and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA … from lignin left over after biomass processing. Great Lakes Bioenergy Research Center , led by the University of …

Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of … Institute (JBEI), we are developing tools including ICE and DIVA to rapidly design combinatorial construct … Science Group supports researchers exploring how to convert sequence into functional assessments. The team has a …

… embargo starting at construct or strain delivery.  Detailed sequence information for constructs are made publicly … repositories (e.g. the Inventory of Composable Elements (ICE) repository and/or DNASU Plasmid Repository) at the end … publications. … Read more about our data management practices and the resources we provide. … Data Policy … Legacy …

… of their synthases so that we can start to use the DNA sequence to predict or just understand better the language … your interest in getting into natural products. DAN: Why are you here at SIMB? AARON PURI: Yeah. Thanks Jackie. … put into antiSMASH after downloading it was isolated from Lake Washington. So it’s really interesting that it was …

… enzymes are, right? ALISON NARAYAN: Yes, and so that’s why I don’t like that sentence. I think that sometimes, we … NARAYAN: I like to think every enzyme is a little snowflake. JACKIE WINTER: To treat it so it’s a delicate … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh …

… does some really exciting work there. And I thought, well, why don’t we try to go to Alaska and see what we can find … not dive to collect the marine tunicates, which was nice because it’s also cold. And so we waited until this … with any kind of gene cluster identification, doing it with sequence alone you have to have some kind of a template to …

… changed the audio editing suite I use which had some nice magic that clean things up. So I didn’t get to talk to … least, talk to us, first about my definitions of things and why I am wrong, and also talk about some of the great … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the …