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The Metagenome Program uses advanced sequencing technologies to … Metagenome Program combines large-scale, time-series metagenomic data with detailed characterization of model … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

The Sequencing Technologies Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to scientists …

The Fungal & Algal Program explores the vast diversity of fungi and … program’s focus is on large-scale sequencing efforts that survey the vast phylogenetic and ecological diversity of … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of …

Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from … and archaeal lineages to improve phylogenetic analysis, metagenomic annotations, and function distribution. These …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample … Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is …

Biology is currently experiencing a revolution brought on by rapid developments in genomics … (2023) Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. … al. (2017) Protein structure determination using metagenome sequence data. Science   355(6322):294-298 Paez-Espino D. et …

DAN UDWARY: You’re listening to the Department of Energy … more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene …

… … DAN UDWARY: You’re listening to the Department of Energy … there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger …

Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic … develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial …