Search

… such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and metabolomics data, shedding light on … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

… about microbiology and natural products from the Great Salt Lake, and you’re going to learn, like me, what a “haboob” … is like, what’s your origin story in natural products? Why are you doing this? JACLYN WINTER: I’ll kind of go back … have an E. coli strain that we’ve been working on that we sequenced the genome. And it has 17 resistant genes on a …

… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger … soil. But we also have, in collaboration with other people, lake sediments. We have microbiomes from different …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …

… and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and … mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature Communications. 9 (1), 1-9 Schulz …

… addressing key environmental challenges, such as improving soil health, carbon sequestration and bioeconomy … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from … of microbial communities based on their metagenome sequence, in the context of reference isolate genomes …

… capabilities and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA … from lignin left over after biomass processing. Great Lakes Bioenergy Research Center , led by the University of … the refining of new technology (e.g., single-cell genomics; metagenomics, etc.).   The faculty-level scientist must be …

… of their synthases so that we can start to use the DNA sequence to predict or just understand better the language … your interest in getting into natural products. DAN: Why are you here at SIMB? AARON PURI: Yeah. Thanks Jackie. … put into antiSMASH after downloading it was isolated from Lake Washington. So it’s really interesting that it was …

… sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs … in length, cloned into vector of choice Glycerol stock of sequence verified clone 170/NA DNA Synthesis Constructs …

… about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … biological perspective, like what was this bacterium, and why did your group want to study it? Marnix Medema: You mean … the action of the microbiome because if you sterilize the soil, the protective effect is gone. You can transplant the …

… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene … disparate environments. There’s some marine. There’s some soil samples. There’s human gut samples. There’s lots and …