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The Fungal & Algal Program explores the vast diversity of fungi … with plants (mycorrhizae, endophytes, growth promoters, or pathogens) and as the most efficient degraders of plant … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of …

The Fungal & Algal Program Advisory Committees is chartered by …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …

… sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs … to determine coverage of variants depends on project Fungal Minimal Draft Lower coverage short-read whole genome …

… episode is our conversation with Nancy Keller, a fantastic fungal natural products researcher from the University of … out introns and dealing with, you know, weirdness in the sequence. You know, some clusters are not clustered…   … it so easily with fungi. So…   NANCY: Yeah, I don’t know why. For example, with that – actually there’s a good talk …

… diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a … ‘omics methods. Here we were able to capture both plant and fungal expression patterns in root cross-sections. … …

… about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … biological perspective, like what was this bacterium, and why did your group want to study it? Marnix Medema: You mean … are protecting the plants against pathogens. So usually fungal or oomycete pathogens. In this case they worked on a …

… at genomes and seeing where the really hard things to sequence were, and wondering what those … what those were … functional was these secondary metabolite pathways. So why was that? What is it about secondary metabolite pathways … this and deal with it is through these antibiotic- or antifungal-producing bacteria that live on the exoskeleton of …

… the paradigm of how to discover natural products. So, why I’m very excited to be working with Dan, you, with the … develop enabling technologies. ie how to translate the ATGC sequence into discrete small molecules. So, Dan, I’m very … natural products of microbial origin is around 30,000 from fungal, and a 40,000 from bacteria. Okay? And among the …

… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … it has a really interesting biosynthetic pathway because fungal genes are cool. And if you like fungal genes, you … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene …

DNA Synthesis and Single-Cell Genomics Vivian Ng Fungal Genomics …